PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000145953
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 254aa    MW: 28811.1 Da    PI: 7.37
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000145953genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.67.1e-30130187258
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                    +D ++WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers ++p++++itY+ eHnh
  MDP0000145953 130 SDVWAWRKYGQKPIKGSPHPRSYYRCSSSkGCSARKQVERSCSNPETFIITYTAEHNH 187
                    79*************************998**************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-30115190IPR003657WRKY domain
PROSITE profilePS5081132.902124190IPR003657WRKY domain
SuperFamilySSF1182903.01E-25127190IPR003657WRKY domain
SMARTSM007745.1E-33129189IPR003657WRKY domain
PfamPF031062.6E-25131187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MENWDLQAVV RGCNTDIDEV MEDSQIPYFF APLSLQEDDE LFQAYFPQAF EATTTLAELE  60
ELYKPFYPVN QITSPPTILA SSISVPQEVI TEAPKLIKNM KESAPICKRI SRKNQNKRVX  120
KEVKAEDLFS DVWAWRKYGQ KPIKGSPHPR SYYRCSSSKG CSARKQVERS CSNPETFIIT  180
YTAEHNHVHP TRRNSLAGST RSKFPSSRNK DKCSSSSNSP ATPNLAASIE DNREFVESAD  240
INIVKEEAKF LERG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A2e-181271901577Probable WRKY transcription factor 4
1wj2_A2e-181271901577Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302311e-151leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0136831e-112GU013683.1 Malus x domestica transcription factor WRKY (WRKY) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008363282.10.0PREDICTED: probable WRKY transcription factor 29 isoform X1
SwissprotQ9SUS16e-57WRK29_ARATH; Probable WRKY transcription factor 29
TrEMBLM5WSN21e-124M5WSN2_PRUPE; Uncharacterized protein
STRINGVIT_02s0025g00420.t014e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.11e-52WRKY family protein